Variant report

Variant	rs17149373
Chromosome Location	chr11:86472301-86472302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86471960..86474336-chr11:86510433..86512699,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150687	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10898535	0.84[YRI][hapmap]
rs11234804	0.84[YRI][hapmap]
rs11234806	0.85[YRI][hapmap]
rs12787345	1.00[ASN][1000 genomes]
rs12793673	1.00[ASN][1000 genomes]
rs12799759	1.00[ASN][1000 genomes]
rs12803572	1.00[ASN][1000 genomes]
rs12807836	1.00[ASN][1000 genomes]
rs2015747	1.00[ASN][1000 genomes]
rs34870456	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34906001	1.00[ASN][1000 genomes]
rs35029679	1.00[ASN][1000 genomes]
rs35322327	1.00[ASN][1000 genomes]
rs4245425	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4363628	0.92[CEU][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943956	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4944626	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4944627	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4944628	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7102870	0.92[CEU][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110253	0.83[EUR][1000 genomes]
rs7114719	1.00[ASN][1000 genomes]
rs7128682	0.85[YRI][hapmap]
rs71465661	1.00[ASN][1000 genomes]
rs744293	1.00[ASN][1000 genomes]
rs7929251	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv468775	chr11:86453415-86480716	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv555705	chr11:86453415-86480716	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86454000-86474000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:86456600-86478000	Weak transcription	Aorta	Aorta
3	chr11:86461400-86479600	Weak transcription	Psoas Muscle	Psoas
4	chr11:86464800-86472600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:86469800-86472800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:86470000-86473000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:86470600-86473000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:86471400-86472800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:86471400-86473400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:86471400-86473800	Enhancers	Osteobl	bone
11	chr11:86471600-86473600	Enhancers	A549	lung
12	chr11:86471600-86473800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr11:86471600-86473800	Enhancers	NH-A	brain
14	chr11:86471600-86474400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:86471800-86472800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:86471800-86472800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:86471800-86472800	Weak transcription	HSMMtube	muscle
18	chr11:86471800-86472800	Weak transcription	NHLF	lung
19	chr11:86471800-86473000	Weak transcription	HSMM	muscle
20	chr11:86472200-86472600	Weak transcription	NHDF-Ad	bronchial

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