Variant report

Variant	rs34906001
Chromosome Location	chr11:86499418-86499419
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45825293..45827248-chr11:86498185..86501073,2	MCF-7	breast:
2	chr11:86452587..86455678-chr11:86498398..86501247,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181830	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10898535	0.85[AFR][1000 genomes]
rs11234804	0.85[AFR][1000 genomes]
rs11234805	0.85[AFR][1000 genomes]
rs11234806	0.85[AFR][1000 genomes]
rs12362094	0.85[AFR][1000 genomes]
rs12786875	0.85[AFR][1000 genomes]
rs12787345	1.00[ASN][1000 genomes]
rs12787853	0.85[AFR][1000 genomes]
rs12793595	0.85[AFR][1000 genomes]
rs12793673	1.00[ASN][1000 genomes]
rs12799759	1.00[ASN][1000 genomes]
rs12803572	1.00[ASN][1000 genomes]
rs12807836	1.00[ASN][1000 genomes]
rs17149373	1.00[ASN][1000 genomes]
rs2015747	1.00[ASN][1000 genomes]
rs34870456	1.00[ASN][1000 genomes]
rs35029679	1.00[ASN][1000 genomes]
rs35322327	1.00[ASN][1000 genomes]
rs4363628	1.00[ASN][1000 genomes]
rs6592314	0.82[AFR][1000 genomes]
rs7102870	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114719	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128682	0.85[AFR][1000 genomes]
rs71465661	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744293	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929251	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86487400-86501400	Weak transcription	Ovary	ovary
2	chr11:86493000-86502200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:86495400-86510400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:86495600-86501000	Weak transcription	A549	lung
5	chr11:86495800-86501000	Weak transcription	Fetal Kidney	kidney
6	chr11:86496600-86501400	Weak transcription	Fetal Lung	lung
7	chr11:86496600-86502000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:86497000-86500000	Weak transcription	Hela-S3	cervix
9	chr11:86497000-86510000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr11:86497200-86501600	Weak transcription	HSMMtube	muscle
11	chr11:86499000-86502000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:86499400-86500400	Weak transcription	Fetal Intestine Large	intestine
13	chr11:86499400-86500600	Weak transcription	Fetal Intestine Small	intestine

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