Variant report

Variant	rs7114719
Chromosome Location	chr11:86494772-86494773
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12787345	1.00[ASN][1000 genomes]
rs12793673	1.00[ASN][1000 genomes]
rs12799759	1.00[ASN][1000 genomes]
rs12803572	1.00[ASN][1000 genomes]
rs12807836	1.00[ASN][1000 genomes]
rs17149373	1.00[ASN][1000 genomes]
rs2015747	1.00[ASN][1000 genomes]
rs34870456	1.00[ASN][1000 genomes]
rs34906001	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35029679	1.00[ASN][1000 genomes]
rs35322327	1.00[ASN][1000 genomes]
rs4363628	1.00[ASN][1000 genomes]
rs7102870	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465661	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744293	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929251	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86487400-86501400	Weak transcription	Ovary	ovary
2	chr11:86487800-86495000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:86491800-86496400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:86492600-86495800	Enhancers	Fetal Intestine Small	intestine
5	chr11:86492800-86495400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:86493000-86502200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:86493600-86495600	Enhancers	A549	lung
8	chr11:86493600-86496600	Enhancers	Fetal Lung	lung
9	chr11:86493800-86497000	Enhancers	Hela-S3	cervix
10	chr11:86494000-86496400	Weak transcription	HSMM	muscle
11	chr11:86494200-86495200	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:86494200-86495200	Weak transcription	Small Intestine	intestine
13	chr11:86494400-86497000	Enhancers	Colon Smooth Muscle	Colon
14	chr11:86494400-86497800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:86494600-86495000	Weak transcription	Fetal Intestine Large	intestine
16	chr11:86494600-86495800	Enhancers	Rectal Smooth Muscle	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links