Variant report

Variant	rs1939664
Chromosome Location	chr11:120585300-120585301
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120584973..120587715-chr11:120590633..120593353,2	K562	blood:
2	chr11:120584157..120585682-chr11:120588505..120590152,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10736504	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3132775	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3132784	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7111007	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3693392	chr11:120549745-120628012	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1041465	chr11:120582595-120630114	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv541180	chr11:120582595-120630114	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120580000-120585800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:120581000-120585800	Enhancers	Ovary	ovary
3	chr11:120581800-120585800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:120582200-120585600	Weak transcription	Brain Angular Gyrus	brain
5	chr11:120582200-120585600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:120582200-120585800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:120582200-120587200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:120582200-120587200	Weak transcription	Colon Smooth Muscle	Colon
9	chr11:120582200-120588800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:120582400-120585600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:120582800-120585800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:120583000-120585800	Weak transcription	Brain Hippocampus Middle	brain
13	chr11:120583000-120585800	Weak transcription	Colonic Mucosa	Colon
14	chr11:120583200-120585600	Weak transcription	Adipose Nuclei	Adipose
15	chr11:120583600-120585800	Weak transcription	NHLF	lung
16	chr11:120583800-120585600	Weak transcription	NHDF-Ad	bronchial
17	chr11:120583800-120585800	Enhancers	Fetal Intestine Small	intestine
18	chr11:120584000-120585800	Enhancers	Fetal Intestine Large	intestine
19	chr11:120584200-120586800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr11:120584600-120585600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr11:120585000-120585400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr11:120585000-120585400	Enhancers	GM12878-XiMat	blood
23	chr11:120585000-120585800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:120585000-120585800	Enhancers	HUVEC	blood vessel
25	chr11:120585000-120586400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr11:120585200-120585400	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr11:120585200-120585400	Flanking Active TSS	Fetal Kidney	kidney
28	chr11:120585200-120585600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr11:120585200-120585600	Enhancers	HepG2	liver
30	chr11:120585200-120585800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr11:120585200-120586200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:120585200-120586400	Enhancers	HUES48 Cell Line	embryonic stem cell

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