Variant report

Variant	rs3132775
Chromosome Location	chr11:120585993-120585994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120584973..120587715-chr11:120590633..120593353,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10736504	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1939664	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3132784	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3693392	chr11:120549745-120628012	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1041465	chr11:120582595-120630114	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv541180	chr11:120582595-120630114	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120582200-120587200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:120582200-120587200	Weak transcription	Colon Smooth Muscle	Colon
3	chr11:120582200-120588800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:120584200-120586800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:120585000-120586400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr11:120585200-120586200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:120585200-120586400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:120585400-120586000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:120585400-120586200	Flanking Active TSS	GM12878-XiMat	blood
10	chr11:120585400-120586400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr11:120585400-120586400	Enhancers	Spleen	Spleen
12	chr11:120585600-120586000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr11:120585600-120586000	Bivalent Enhancer	Placenta	Placenta
14	chr11:120585600-120586200	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr11:120585600-120586800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr11:120585600-120587000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:120585800-120586000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:120585800-120586000	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
19	chr11:120585800-120586000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr11:120585800-120586000	Flanking Active TSS	Brain Angular Gyrus	brain
21	chr11:120585800-120586000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
22	chr11:120585800-120586000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
23	chr11:120585800-120586000	Bivalent Enhancer	Left Ventricle	heart
24	chr11:120585800-120586000	Flanking Active TSS	HepG2	liver
25	chr11:120585800-120586000	Enhancers	NH-A	brain
26	chr11:120585800-120586000	Enhancers	NHDF-Ad	bronchial
27	chr11:120585800-120586000	Flanking Active TSS	NHLF	lung
28	chr11:120585800-120586200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:120585800-120586200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:120585800-120586200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:120585800-120586200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:120585800-120586200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:120585800-120586200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
34	chr11:120585800-120586200	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr11:120585800-120586200	Active TSS	Brain Hippocampus Middle	brain
36	chr11:120585800-120586200	Active TSS	Colonic Mucosa	Colon
37	chr11:120585800-120586200	Flanking Active TSS	Duodenum Mucosa	Duodenum
38	chr11:120585800-120586200	Flanking Active TSS	Fetal Intestine Large	intestine
39	chr11:120585800-120586200	Flanking Active TSS	Fetal Intestine Small	intestine
40	chr11:120585800-120586200	Flanking Active TSS	Fetal Kidney	kidney
41	chr11:120585800-120586200	Flanking Active TSS	Fetal Muscle Trunk	muscle
42	chr11:120585800-120586200	Flanking Active TSS	Ovary	ovary
43	chr11:120585800-120586200	Active TSS	Rectal Mucosa Donor 29	rectum
44	chr11:120585800-120586200	Active TSS	Rectal Smooth Muscle	rectum
45	chr11:120585800-120586200	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
46	chr11:120585800-120586200	Bivalent/Poised TSS	Hela-S3	cervix
47	chr11:120585800-120586200	Flanking Active TSS	HUVEC	blood vessel
48	chr11:120585800-120586200	Bivalent/Poised TSS	Osteobl	bone
49	chr11:120585800-120586400	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr11:120585800-120586400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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