Variant report

Variant	rs1940091
Chromosome Location	chr11:84367219-84367220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11234106	0.85[ASW][hapmap];0.81[CEU][hapmap];0.81[GIH][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12273005	0.81[CEU][hapmap];0.81[GIH][hapmap]
rs12284979	0.81[CEU][hapmap]
rs1430952	1.00[JPT][hapmap]
rs17147476	0.87[GIH][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs17147479	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs17735188	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs17735200	1.00[CEU][hapmap];0.82[JPT][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes]
rs17735284	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1940071	0.87[CEU][hapmap];0.82[CHD][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1940088	0.83[CEU][hapmap];0.90[LWK][hapmap];0.81[MKK][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes]
rs4269947	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56405892	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58235443	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59358265	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61898998	0.83[EUR][1000 genomes]
rs61899001	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61899004	0.91[EUR][1000 genomes]
rs61899024	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61899025	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61899026	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61899028	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61899029	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6592193	0.85[GIH][hapmap]
rs7107160	0.87[CEU][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7119459	0.94[CEU][hapmap];0.94[GIH][hapmap];0.85[TSI][hapmap]
rs7121721	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7933975	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7943786	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7946469	0.82[CHD][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv898031	chr11:84060342-84379671	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1047875	chr11:84150376-84380393	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv917176	chr11:84157998-84419488	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1047342	chr11:84187214-84380393	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv555612	chr11:84222437-84415122	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1037047	chr11:84290572-84414586	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv541106	chr11:84290572-84414586	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1053669	chr11:84300946-84382470	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv1049964	chr11:84315563-84578721	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv555615	chr11:84334144-84541403	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv2761689	chr11:84349593-84371598	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv555616	chr11:84350646-84400029	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv1050367	chr11:84355133-84476542	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv541107	chr11:84355133-84476542	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv1043987	chr11:84355133-84516193	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv541108	chr11:84355133-84516193	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv1051456	chr11:84355133-84544954	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84365800-84367400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr11:84365800-84367400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr11:84366000-84367400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr11:84366200-84367400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:84366200-84367400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:84366200-84367400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr11:84366200-84367400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr11:84366400-84367400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr11:84366400-84367400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:84366600-84375800	Weak transcription	Fetal Brain Male	brain
11	chr11:84366800-84367400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr11:84366800-84367400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:84366800-84367600	Enhancers	Pancreatic Islets	Pancreatic Islet

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