Variant report

Variant	rs17735200
Chromosome Location	chr11:84337266-84337267
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10160778	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10466723	0.92[AMR][1000 genomes]
rs11234106	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs12273005	0.81[CEU][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.96[AMR][1000 genomes]
rs12284979	0.81[CEU][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.92[AMR][1000 genomes]
rs1430952	0.82[JPT][hapmap]
rs17147476	0.82[MEX][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs17147479	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17735188	1.00[JPT][hapmap]
rs17735284	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1940071	0.87[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1940088	0.83[CEU][hapmap]
rs1940091	1.00[CEU][hapmap];0.82[JPT][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes]
rs4145049	0.82[MEX][hapmap]
rs4269947	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56263826	0.96[AMR][1000 genomes]
rs56405892	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56892049	0.88[AMR][1000 genomes]
rs57320142	0.96[AMR][1000 genomes]
rs58235443	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59358265	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60815199	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61898990	0.92[AMR][1000 genomes]
rs61898996	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61898998	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61899001	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61899004	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899024	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61899025	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61899026	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61899028	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61899029	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7105003	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7107160	0.87[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7119459	0.94[CEU][hapmap];0.82[MEX][hapmap];0.82[MKK][hapmap];0.96[TSI][hapmap];0.90[YRI][hapmap];0.87[AMR][1000 genomes]
rs7121721	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73511131	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7933975	0.83[EUR][1000 genomes]
rs7943786	0.84[EUR][1000 genomes]
rs7946469	1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv898031	chr11:84060342-84379671	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1047875	chr11:84150376-84380393	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv917176	chr11:84157998-84419488	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1047342	chr11:84187214-84380393	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1035566	chr11:84203688-84340842	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv555612	chr11:84222437-84415122	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv468766	chr11:84267185-84345829	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv555614	chr11:84267185-84345829	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv898032	chr11:84274481-84364527	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv1037047	chr11:84290572-84414586	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv541106	chr11:84290572-84414586	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv1053669	chr11:84300946-84382470	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv1049964	chr11:84315563-84578721	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv898033	chr11:84319959-84350646	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv898034	chr11:84319959-84364527	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv1047004	chr11:84328458-84364594	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv555615	chr11:84334144-84541403	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84336000-84339600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:84337200-84337600	Enhancers	Fetal Heart	heart

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