Variant report

Variant	rs4145049
Chromosome Location	chr11:84254393-84254394
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84252863..84255675-chr11:84267992..84270497,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10466699	0.82[JPT][hapmap]
rs10466723	0.81[ASN][1000 genomes]
rs10501568	1.00[CHB][hapmap];0.81[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11234096	0.92[JPT][hapmap]
rs12273005	0.92[JPT][hapmap];0.82[MEX][hapmap]
rs12284979	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[ASN][1000 genomes]
rs1430952	0.87[EUR][1000 genomes]
rs17147448	0.92[JPT][hapmap]
rs17734964	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17735200	0.82[MEX][hapmap]
rs17807611	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.92[JPT][hapmap];0.84[LWK][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17807712	1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1940072	0.85[JPT][hapmap]
rs56263826	0.81[ASN][1000 genomes]
rs56892049	0.85[ASN][1000 genomes]
rs57320142	0.85[ASN][1000 genomes]
rs59996663	0.84[ASN][1000 genomes]
rs60815199	0.80[ASN][1000 genomes]
rs61897755	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61897759	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61898960	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61898962	0.85[ASN][1000 genomes]
rs61898963	0.85[ASN][1000 genomes]
rs61898990	0.85[ASN][1000 genomes]
rs7105003	0.85[ASN][1000 genomes]
rs7107450	0.85[JPT][hapmap]
rs7112468	0.92[CHD][hapmap];1.00[JPT][hapmap]
rs7114068	0.92[JPT][hapmap]
rs7114098	0.92[JPT][hapmap]
rs7119459	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1038641	chr11:83996453-84334045	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv541103	chr11:83996453-84334045	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv898031	chr11:84060342-84379671	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1041755	chr11:84067493-84315623	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv541104	chr11:84067493-84315623	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv817504	chr11:84070883-84301151	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1052925	chr11:84092727-84274689	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1050876	chr11:84128705-84262927	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv541105	chr11:84128705-84262927	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1047875	chr11:84150376-84380393	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv917176	chr11:84157998-84419488	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv508642	chr11:84160786-84255107	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1047342	chr11:84187214-84380393	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
16	nsv555611	chr11:84190182-84284521	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv1040419	chr11:84194827-84287575	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv519456	chr11:84198908-84255321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1035566	chr11:84203688-84340842	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
20	nsv555612	chr11:84222437-84415122	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
21	nsv555613	chr11:84244769-84274481	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84252200-84256800	Enhancers	Fetal Brain Male	brain
2	chr11:84252400-84254400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:84252400-84254600	Enhancers	Stomach Smooth Muscle	stomach
4	chr11:84252400-84256600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr11:84252400-84256600	Enhancers	Brain Germinal Matrix	brain
6	chr11:84252600-84254600	Enhancers	Fetal Brain Female	brain
7	chr11:84252800-84255200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr11:84253200-84255200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:84253200-84263800	Weak transcription	Psoas Muscle	Psoas
10	chr11:84253400-84255200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:84253400-84255600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:84253600-84254400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr11:84253800-84254400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:84253800-84254800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:84254000-84254800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr11:84254000-84255400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr11:84254000-84255400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr11:84254000-84256000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:84254200-84254400	Enhancers	Brain Angular Gyrus	brain
20	chr11:84254200-84254600	Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr11:84254200-84254600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr11:84254200-84254600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr11:84254200-84255000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr11:84254200-84255800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:84254200-84256000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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