Variant report

Variant	rs1941409
Chromosome Location	chr11:120150500-120150501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10160467	1.00[ASN][1000 genomes]
rs12284449	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12364701	1.00[ASN][1000 genomes]
rs2155809	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34172923	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs622373	1.00[ASN][1000 genomes]
rs6589797	1.00[ASN][1000 genomes]
rs7102643	1.00[ASN][1000 genomes]
rs7930543	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120137400-120152200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:120147200-120151600	Weak transcription	Lung	lung
3	chr11:120148600-120151000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:120149200-120152800	Enhancers	Hela-S3	cervix
5	chr11:120150000-120153000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:120150200-120151000	Enhancers	Esophagus	oesophagus
7	chr11:120150200-120152600	Enhancers	NHEK	skin
8	chr11:120150200-120154200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:120150400-120151400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:120150400-120151400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:120150400-120152400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr11:120150400-120152800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:120150400-120153000	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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