Variant report

Variant	rs7930543
Chromosome Location	chr11:120162552-120162553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120161703..120163945-chr11:120169306..120172296,3	K562	blood:
2	chr11:120105158..120109707-chr11:120158183..120163088,7	MCF-7	breast:
3	chr11:120101055..120116563-chr11:120160593..120179156,52	K562	blood:
4	chr11:120161703..120167886-chr11:120168928..120172296,6	K562	blood:
5	chr11:120106473..120108744-chr11:120160537..120163342,3	MCF-7	breast:
6	chr11:120159549..120163046-chr11:120164212..120166890,3	K562	blood:
7	chr11:120161676..120163879-chr11:120164958..120166654,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10160467	1.00[ASN][1000 genomes]
rs12364701	1.00[ASN][1000 genomes]
rs1941409	1.00[ASN][1000 genomes]
rs622373	1.00[ASN][1000 genomes]
rs6589797	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120159400-120162600	Weak transcription	Placenta	Placenta
2	chr11:120159600-120163800	Weak transcription	Hela-S3	cervix
3	chr11:120161200-120166400	Enhancers	Duodenum Mucosa	Duodenum
4	chr11:120162400-120165000	Weak transcription	Fetal Intestine Large	intestine
5	chr11:120162400-120165800	Weak transcription	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links