Variant report

Variant	rs1942836
Chromosome Location	chr11:101049347-101049348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100992998..100996575-chr11:101047325..101050411,3	MCF-7	breast:
2	chr11:101048948..101049879-chr11:101307017..101307630,2	MCF-7	breast:
3	chr11:100949048..100949717-chr11:101049059..101049659,3	MCF-7	breast:
4	chr11:101049202..101049907-chr11:101171175..101171807,2	MCF-7	breast:
5	chr11:100904599..100905404-chr11:101049211..101049860,2	MCF-7	breast:
6	chr11:101047489..101050587-chr11:101203983..101207285,5	MCF-7	breast:
7	chr11:101048325..101051253-chr11:101059646..101061609,2	K562	blood:
8	chr11:101049025..101049989-chr11:101206619..101207414,6	MCF-7	breast:
9	chr11:101049025..101049983-chr11:101206619..101207429,6	MCF-7	breast:
10	chr11:101049126..101050326-chr11:101169672..101170618,5	MCF-7	breast:
11	chr11:101048952..101049967-chr11:101206917..101207587,3	MCF-7	breast:
12	chr11:101049065..101050001-chr11:101169624..101170828,7	MCF-7	breast:
13	chr11:100997341..101001262-chr11:101046591..101052286,10	MCF-7	breast:
14	chr11:100949048..100949717-chr11:101049098..101049659,2	MCF-7	breast:
15	chr11:101048997..101050326-chr11:101169552..101170716,7	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10791445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10895075	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1892882	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4595509	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4754742	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];1.00[YRI][hapmap]
rs4754743	0.94[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap]
rs948748	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101037400-101080800	Weak transcription	Left Ventricle	heart
2	chr11:101038200-101050600	Weak transcription	Right Ventricle	heart
3	chr11:101046600-101051000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:101046600-101058600	Weak transcription	Aorta	Aorta
5	chr11:101047800-101051000	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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