Variant report
| Variant | rs4754743 |
|---|---|
| Chromosome Location | chr11:101114519-101114520 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:101000132..101002979-chr11:101113314..101115019,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000082175 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10501974 | 0.81[ASN][1000 genomes] |
| rs10750599 | 0.82[ASN][1000 genomes] |
| rs10791445 | 0.90[JPT][hapmap] |
| rs10791448 | 0.81[ASN][1000 genomes] |
| rs10895076 | 0.82[ASN][1000 genomes] |
| rs10895078 | 0.81[ASN][1000 genomes] |
| rs10895083 | 0.89[ASN][1000 genomes] |
| rs11224642 | 0.82[ASN][1000 genomes] |
| rs11224654 | 0.89[ASN][1000 genomes] |
| rs11224656 | 0.89[ASN][1000 genomes] |
| rs1942836 | 0.94[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap] |
| rs1954978 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2156522 | 0.89[ASN][1000 genomes] |
| rs4121835 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4754004 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4754005 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4754742 | 0.82[CEU][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs7931365 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv556131 | chr11:100985777-101480017 | Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv530644 | chr11:101010088-101486038 | Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | esv2753322 | chr11:101052790-101311790 | Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:101112200-101115600 | Weak transcription | Ovary | ovary |
