Variant report

Variant	rs1944769
Chromosome Location	chr9:18213093-18213094
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10733350	1.00[AMR][1000 genomes]
rs10738503	0.81[AFR][1000 genomes]
rs10738505	1.00[AMR][1000 genomes]
rs2026905	1.00[AMR][1000 genomes]
rs4961630	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4961631	1.00[AMR][1000 genomes]
rs58093533	1.00[AMR][1000 genomes]
rs6475206	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7869817	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv892679	chr9:18044802-18226609	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv892681	chr9:18127068-18250459	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv892682	chr9:18166112-18272700	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1034518	chr9:18166899-18214878	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv892683	chr9:18201083-18226609	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18210200-18213200	Weak transcription	Fetal Intestine Small	intestine
2	chr9:18212000-18213400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr9:18212600-18213400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr9:18212800-18213200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr9:18212800-18213200	Enhancers	Fetal Brain Male	brain
6	chr9:18212800-18213400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr9:18213000-18213400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr9:18213000-18213400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:18213000-18213400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr9:18213000-18213400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr9:18213000-18213400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:18213000-18213400	Active TSS	Fetal Brain Female	brain
13	chr9:18213000-18213400	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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