Variant report

Variant	rs1946140
Chromosome Location	chr16:52108872-52108873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

No data

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-152O14.5.1-1	chr16:52108805-52108923	XLOC_011940
2	lnc-RP11-152O14.5.1-1	chr16:52108805-52108923	XLOC_011940
3	lnc-RP11-152O14.5.1-1	chr16:52108805-52108923	XLOC_011940
4	lnc-RP11-152O14.5.1-1	chr16:52108805-52108923	XLOC_011940
5	lnc-RP11-152O14.5.1-1	chr16:52108805-52108923	XLOC_011940
6	lnc-RP11-152O14.5.1-1	chr16:52108805-52108923	NONHSAT142491

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1111477	1.00[AMR][1000 genomes]
rs13330772	1.00[AMR][1000 genomes]
rs13331649	1.00[AMR][1000 genomes]
rs13335991	1.00[AMR][1000 genomes]
rs28844932	1.00[AMR][1000 genomes]
rs9922005	1.00[AMR][1000 genomes]
rs9929113	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv34024	chr16:51878565-52316530	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv827650	chr16:52067728-52124369	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1058257	chr16:52093549-52271815	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52101400-52110400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr16:52103000-52112600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr16:52104200-52112600	Weak transcription	Brain Angular Gyrus	brain
4	chr16:52104200-52112600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr16:52107600-52109000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr16:52108800-52110000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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