Variant report

Variant	rs1946759
Chromosome Location	chr3:86844732-86844733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11914380	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11923534	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11927541	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12489711	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12489958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12490763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12491420	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12497904	1.00[EUR][1000 genomes]
rs12631410	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12633964	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12638587	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1437052	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17023661	1.00[EUR][1000 genomes]
rs1898272	1.00[EUR][1000 genomes]
rs4855173	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56938004	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57542752	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58381744	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58503043	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61340067	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72912306	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9713017	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877116	chr3:86518318-86964922	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv877117	chr3:86665408-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv877118	chr3:86722823-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv877119	chr3:86722823-86952516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv877120	chr3:86722823-86961118	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv877121	chr3:86732817-86916882	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv877122	chr3:86732817-86927574	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv877123	chr3:86732817-86952516	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv877125	chr3:86794501-86916882	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv877126	chr3:86794501-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv519148	chr3:86831077-86995124	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv877127	chr3:86832039-86952516	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv1008177	chr3:86841615-86905761	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86836600-86864400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:86842600-86844800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr3:86844000-86844800	Enhancers	NHLF	lung
4	chr3:86844000-86845000	Enhancers	Osteobl	bone
5	chr3:86844000-86849400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:86844200-86844800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:86844200-86844800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:86844200-86844800	Enhancers	NHDF-Ad	bronchial
9	chr3:86844600-86847200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:86844600-86849400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:86844600-86849600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:86844600-86850800	Weak transcription	HSMM	muscle

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