Variant report
| Variant | rs17023661 |
|---|---|
| Chromosome Location | chr3:86968509-86968510 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11914380 | 1.00[EUR][1000 genomes] |
| rs11923534 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11927541 | 1.00[EUR][1000 genomes] |
| rs12489711 | 1.00[EUR][1000 genomes] |
| rs12489958 | 1.00[EUR][1000 genomes] |
| rs12490763 | 1.00[EUR][1000 genomes] |
| rs12491420 | 1.00[EUR][1000 genomes] |
| rs12497904 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12631410 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12633964 | 1.00[EUR][1000 genomes] |
| rs12638587 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1437052 | 1.00[EUR][1000 genomes] |
| rs1898272 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1946759 | 1.00[EUR][1000 genomes] |
| rs2232716 | 0.81[MKK][hapmap] |
| rs4855173 | 1.00[EUR][1000 genomes] |
| rs56938004 | 1.00[EUR][1000 genomes] |
| rs57542752 | 1.00[EUR][1000 genomes] |
| rs58381744 | 1.00[EUR][1000 genomes] |
| rs58503043 | 1.00[EUR][1000 genomes] |
| rs61340067 | 1.00[EUR][1000 genomes] |
| rs72912306 | 1.00[EUR][1000 genomes] |
| rs9713017 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv519148 | chr3:86831077-86995124 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv534036 | chr3:86967129-87283600 | Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
Variant related diseases (count:1)
| Disease | PMID | Source |
|---|---|---|
| Obesity-related traits | 23251661 | GWAS catalog |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:86964600-86971600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
