Variant report

Variant	rs2232716
Chromosome Location	chr3:86988216-86988217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13100686	0.82[ASN][1000 genomes]
rs58203052	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519148	chr3:86831077-86995124	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534036	chr3:86967129-87283600	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86980600-86995600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:86985200-86988800	Enhancers	NHLF	lung
3	chr3:86985800-86988400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr3:86986000-86998200	Weak transcription	A549	lung
5	chr3:86986200-86989000	Genic enhancers	HSMM	muscle
6	chr3:86986800-87014400	Weak transcription	Aorta	Aorta
7	chr3:86987200-86988600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:86987200-86990800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:86987200-86997800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:86987400-87007400	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:86987600-86989000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:86987800-86988400	Genic enhancers	Muscle Satellite Cultured Cells	--
13	chr3:86987800-86988600	Enhancers	Fetal Muscle Leg	muscle
14	chr3:86987800-86989200	Genic enhancers	NH-A	brain
15	chr3:86987800-86996600	Strong transcription	Placenta	Placenta
16	chr3:86987800-86999600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:86988000-86988400	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:86988000-86988400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:86988000-86988400	Weak transcription	Adipose Nuclei	Adipose
20	chr3:86988000-86988600	Genic enhancers	HSMMtube	muscle
21	chr3:86988000-86988800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:86988000-86988800	Enhancers	Osteobl	bone
23	chr3:86988000-86989200	Genic enhancers	NHDF-Ad	bronchial
24	chr3:86988000-86989400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr3:86988000-86992800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr3:86988000-86993600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr3:86988200-86988600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:86988200-86989200	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr3:86988200-86989400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:86988200-86993200	Weak transcription	Fetal Lung	lung
31	chr3:86988200-87007600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr3:86988200-87013400	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links