Variant report

Variant	rs13100686
Chromosome Location	chr3:87031290-87031291
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13074249	1.00[EUR][1000 genomes]
rs13077907	1.00[EUR][1000 genomes]
rs2232716	0.82[ASN][1000 genomes]
rs34400464	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58203052	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534036	chr3:86967129-87283600	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86998800-87036000	Weak transcription	Psoas Muscle	Psoas
2	chr3:87007200-87038400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:87008000-87032000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:87008000-87034200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr3:87012600-87032600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:87016200-87039000	Weak transcription	Fetal Stomach	stomach
7	chr3:87016800-87036800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:87017600-87039000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:87018200-87032600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:87018200-87033600	Weak transcription	A549	lung
11	chr3:87018400-87036400	Weak transcription	Fetal Intestine Large	intestine
12	chr3:87018600-87034200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:87019400-87036600	Weak transcription	Fetal Brain Male	brain
14	chr3:87027200-87032000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:87027600-87032000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:87027800-87032000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr3:87027800-87032400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr3:87028000-87031400	Weak transcription	Fetal Muscle Leg	muscle
19	chr3:87028000-87032000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:87028000-87032000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:87028000-87032000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr3:87028000-87032000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:87028000-87032000	Weak transcription	Aorta	Aorta
24	chr3:87028000-87033600	Weak transcription	Hela-S3	cervix
25	chr3:87028000-87035600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr3:87028000-87036200	Weak transcription	HMEC	breast
27	chr3:87028200-87032600	Weak transcription	Placenta	Placenta
28	chr3:87029400-87032800	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr3:87030200-87031800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr3:87030200-87032000	Weak transcription	Colon Smooth Muscle	Colon
31	chr3:87030200-87032800	Enhancers	NHLF	lung
32	chr3:87030200-87036200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr3:87030400-87031600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr3:87030800-87032000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr3:87030800-87033600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
36	chr3:87031000-87031400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr3:87031000-87031400	Flanking Active TSS	NHDF-Ad	bronchial
38	chr3:87031000-87032000	Active TSS	Ovary	ovary
39	chr3:87031000-87033600	Enhancers	Adipose Nuclei	Adipose
40	chr3:87031000-87033600	Enhancers	Fetal Lung	lung
41	chr3:87031200-87031400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr3:87031200-87031400	Active TSS	HSMMtube	muscle
43	chr3:87031200-87031600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:87031200-87031600	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr3:87031200-87031800	Weak transcription	NH-A	brain
46	chr3:87031200-87031800	Enhancers	Osteobl	bone
47	chr3:87031200-87032000	Active TSS	HSMM	muscle

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