Variant report

Variant	rs58203052
Chromosome Location	chr3:87009102-87009103
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13100686	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2232716	0.82[ASN][1000 genomes]
rs34400464	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs35673977	1.00[AMR][1000 genomes]
rs73844470	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534036	chr3:86967129-87283600	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86986800-87014400	Weak transcription	Aorta	Aorta
2	chr3:86988200-87013400	Weak transcription	Ovary	ovary
3	chr3:86993800-87014200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:86994000-87013200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr3:86994800-87010400	Weak transcription	Fetal Lung	lung
6	chr3:86997600-87013200	Genic enhancers	NHDF-Ad	bronchial
7	chr3:86998000-87019800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:86998800-87036000	Weak transcription	Psoas Muscle	Psoas
9	chr3:87003800-87014200	Weak transcription	Fetal Muscle Leg	muscle
10	chr3:87004200-87014400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:87004400-87010400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:87004400-87014200	Weak transcription	Adipose Nuclei	Adipose
13	chr3:87007000-87013400	Genic enhancers	Osteobl	bone
14	chr3:87007200-87026600	Weak transcription	Esophagus	oesophagus
15	chr3:87007200-87038400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr3:87007600-87009800	Enhancers	Placenta Amnion	Placenta Amnion
17	chr3:87007600-87010800	Enhancers	Hela-S3	cervix
18	chr3:87007600-87010800	Enhancers	NHLF	lung
19	chr3:87007800-87010600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:87007800-87010800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:87007800-87011400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr3:87008000-87009600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:87008000-87009600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:87008000-87009800	Strong transcription	Placenta	Placenta
25	chr3:87008000-87010200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:87008000-87010200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:87008000-87010800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr3:87008000-87010800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr3:87008000-87010800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr3:87008000-87016200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr3:87008000-87016600	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr3:87008000-87022600	Weak transcription	HMEC	breast
33	chr3:87008000-87028800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr3:87008000-87032000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr3:87008000-87034200	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr3:87008200-87009600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr3:87008200-87014600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr3:87008200-87016200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr3:87008200-87022600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr3:87008400-87009400	Weak transcription	NH-A	brain
41	chr3:87008400-87009600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr3:87008400-87009600	Strong transcription	HSMM	muscle
43	chr3:87008400-87009800	Weak transcription	HSMMtube	muscle
44	chr3:87008600-87009400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr3:87008600-87011400	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr3:87008600-87014200	Weak transcription	Colon Smooth Muscle	Colon

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