Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10732765	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs10748398	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10785500	0.87[MEX][hapmap]
rs10785504	1.00[EUR][1000 genomes]
rs11831885	0.80[AFR][1000 genomes]
rs12299765	0.84[LWK][hapmap];0.84[MKK][hapmap]
rs12300089	0.83[YRI][hapmap];0.88[AFR][1000 genomes]
rs12304650	0.83[AFR][1000 genomes]
rs1376994	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs1376996	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1376999	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs17094772	0.84[LWK][hapmap];0.89[MKK][hapmap]
rs2407951	0.84[EUR][1000 genomes]
rs2408002	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4600279	0.95[EUR][1000 genomes]
rs4768065	0.94[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes]
rs4768558	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4768559	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7134690	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7299371	0.94[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes]
rs7299685	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs7300240	0.88[AFR][1000 genomes]
rs7301710	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7311478	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs7958418	0.83[YRI][hapmap];0.88[AFR][1000 genomes]
rs7975796	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1947351	ADAMTS20	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44918600-44972000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr12:44940200-44999600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr12:44942000-44949000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr12:44943400-44998600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr12:44946400-44976400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr12:44947600-44950000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr12:44947800-44949000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:44948400-44949800	Weak transcription	Fetal Brain Female	brain
9	chr12:44948600-44951200	Weak transcription	Brain Germinal Matrix	brain

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