Variant report

Variant	rs10785500
Chromosome Location	chr12:44927227-44927228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10506245	1.00[CHB][hapmap]
rs10748397	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11182527	1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1376994	0.83[CEU][hapmap]
rs1452263	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1527315	1.00[CHB][hapmap]
rs1716609	1.00[CHB][hapmap]
rs1798020	1.00[CHB][hapmap]
rs1798032	1.00[CHB][hapmap]
rs1947351	0.87[MEX][hapmap]
rs2408002	0.81[MEX][hapmap]
rs4768559	0.81[MEX][hapmap]
rs7314412	1.00[CHB][hapmap]
rs840773	1.00[CHB][hapmap]
rs840774	1.00[CHB][hapmap]
rs859016	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10785500	ADAMTS20	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44904600-44936600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr12:44909200-44939800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr12:44912200-44932400	Weak transcription	Fetal Intestine Small	intestine
4	chr12:44916000-44930800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr12:44918600-44972000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr12:44919800-44928400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr12:44924200-44927400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr12:44924400-44939800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr12:44924800-44939800	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr12:44925600-44936200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr12:44925800-44934000	Weak transcription	Fetal Brain Male	brain
12	chr12:44926400-44936600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links