Variant report

Variant	rs840773
Chromosome Location	chr12:44732795-44732796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10506245	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10785500	1.00[CHB][hapmap]
rs1098497	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1527315	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1527318	1.00[YRI][hapmap]
rs1618337	1.00[AMR][1000 genomes]
rs1622682	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1625442	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1643432	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1643433	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1643434	1.00[ASN][1000 genomes]
rs1644007	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1644009	0.83[ASN][1000 genomes]
rs1644010	0.83[ASN][1000 genomes]
rs1644011	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1644014	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1716605	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1716606	1.00[ASN][1000 genomes]
rs1716609	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1726874	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1726879	1.00[ASN][1000 genomes]
rs1726884	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1726887	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1726888	1.00[ASN][1000 genomes]
rs1726889	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1726890	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1726900	1.00[ASN][1000 genomes]
rs1798020	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1798023	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1798025	0.83[ASN][1000 genomes]
rs1798026	0.83[ASN][1000 genomes]
rs1798027	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1798032	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2220726	1.00[YRI][hapmap]
rs4639992	1.00[JPT][hapmap]
rs57957351	1.00[AMR][1000 genomes]
rs58523791	1.00[AMR][1000 genomes]
rs58802461	1.00[ASN][1000 genomes]
rs60441308	1.00[ASN][1000 genomes]
rs7307771	0.87[YRI][hapmap]
rs7314412	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73274196	1.00[AMR][1000 genomes]
rs73274199	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73276216	1.00[AMR][1000 genomes]
rs73276236	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73276237	1.00[AMR][1000 genomes]
rs73276240	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73276257	1.00[AMR][1000 genomes]
rs73276275	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73276299	1.00[AMR][1000 genomes]
rs73276302	1.00[AMR][1000 genomes]
rs73278304	1.00[AMR][1000 genomes]
rs73278305	1.00[AMR][1000 genomes]
rs73278320	1.00[AMR][1000 genomes]
rs73278324	1.00[AMR][1000 genomes]
rs73278334	1.00[AMR][1000 genomes]
rs73278339	1.00[AMR][1000 genomes]
rs73278386	1.00[AMR][1000 genomes]
rs7954216	1.00[JPT][hapmap]
rs7957859	0.85[YRI][hapmap]
rs7958975	1.00[ASN][1000 genomes]
rs7969466	1.00[JPT][hapmap]
rs840764	1.00[ASN][1000 genomes]
rs840766	1.00[ASN][1000 genomes]
rs840767	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs840768	1.00[ASN][1000 genomes]
rs840772	0.83[ASN][1000 genomes]
rs840774	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs859016	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs863482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1038498	chr12:44679455-44816572	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv826356	chr12:44725069-44783443	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44699000-44736000	Weak transcription	Pancreas	Pancrea
2	chr12:44699000-44782000	Weak transcription	Aorta	Aorta
3	chr12:44709200-44743200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:44712400-44765800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:44728400-44744800	Weak transcription	Esophagus	oesophagus
6	chr12:44732400-44735600	Weak transcription	Ovary	ovary
7	chr12:44732600-44732800	Enhancers	Stomach Smooth Muscle	stomach
8	chr12:44732600-44733000	Enhancers	HMEC	breast

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