Variant report
| Variant | rs73278304 |
|---|---|
| Chromosome Location | chr12:44794467-44794468 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:44793231..44794791-chr12:44901498..44904430,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1098497 | 1.00[AMR][1000 genomes] |
| rs1618337 | 1.00[AMR][1000 genomes] |
| rs1622682 | 1.00[AMR][1000 genomes] |
| rs1643433 | 1.00[AMR][1000 genomes] |
| rs1644011 | 1.00[AMR][1000 genomes] |
| rs1726887 | 1.00[AMR][1000 genomes] |
| rs57957351 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58523791 | 1.00[AMR][1000 genomes] |
| rs60722167 | 0.92[AFR][1000 genomes] |
| rs73274196 | 1.00[AMR][1000 genomes] |
| rs73274199 | 1.00[AMR][1000 genomes] |
| rs73276216 | 1.00[AMR][1000 genomes] |
| rs73276236 | 1.00[AMR][1000 genomes] |
| rs73276237 | 1.00[AMR][1000 genomes] |
| rs73276240 | 1.00[AMR][1000 genomes] |
| rs73276257 | 1.00[AMR][1000 genomes] |
| rs73276275 | 1.00[AMR][1000 genomes] |
| rs73276299 | 1.00[AMR][1000 genomes] |
| rs73276302 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73278305 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73278320 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73278324 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73278334 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73278339 | 1.00[AMR][1000 genomes] |
| rs73278386 | 1.00[AMR][1000 genomes] |
| rs840767 | 1.00[AMR][1000 genomes] |
| rs840773 | 1.00[AMR][1000 genomes] |
| rs859016 | 1.00[AMR][1000 genomes] |
| rs863482 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049818 | chr12:44486312-45133783 | Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1038498 | chr12:44679455-44816572 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:44792600-44796600 | Weak transcription | Fetal Intestine Large | intestine |
