Variant report

Variant	rs73278334
Chromosome Location	chr12:44840301-44840302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1098497	1.00[AMR][1000 genomes]
rs1618337	1.00[AMR][1000 genomes]
rs1622682	1.00[AMR][1000 genomes]
rs1643433	1.00[AMR][1000 genomes]
rs1644011	1.00[AMR][1000 genomes]
rs1726887	1.00[AMR][1000 genomes]
rs57957351	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58523791	1.00[AMR][1000 genomes]
rs60722167	0.98[AFR][1000 genomes]
rs73274196	1.00[AMR][1000 genomes]
rs73274199	1.00[AMR][1000 genomes]
rs73276216	1.00[AMR][1000 genomes]
rs73276236	1.00[AMR][1000 genomes]
rs73276237	1.00[AMR][1000 genomes]
rs73276240	1.00[AMR][1000 genomes]
rs73276257	1.00[AMR][1000 genomes]
rs73276275	1.00[AMR][1000 genomes]
rs73276299	1.00[AMR][1000 genomes]
rs73276302	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278304	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278305	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278320	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278324	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278339	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278386	1.00[AMR][1000 genomes]
rs73284058	1.00[AMR][1000 genomes]
rs840767	1.00[AMR][1000 genomes]
rs840773	1.00[AMR][1000 genomes]
rs859016	1.00[AMR][1000 genomes]
rs863482	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44839400-44840600	Enhancers	HepG2	liver
2	chr12:44839600-44840400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:44840000-44840400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links