Variant report

Variant	rs73278339
Chromosome Location	chr12:44843773-44843774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1098497	1.00[AMR][1000 genomes]
rs1618337	1.00[AMR][1000 genomes]
rs1622682	1.00[AMR][1000 genomes]
rs1643433	1.00[AMR][1000 genomes]
rs1644011	1.00[AMR][1000 genomes]
rs1726887	1.00[AMR][1000 genomes]
rs57957351	1.00[AMR][1000 genomes]
rs58523791	1.00[AMR][1000 genomes]
rs60722167	0.83[AFR][1000 genomes]
rs73274196	1.00[AMR][1000 genomes]
rs73274199	1.00[AMR][1000 genomes]
rs73276216	1.00[AMR][1000 genomes]
rs73276236	1.00[AMR][1000 genomes]
rs73276237	1.00[AMR][1000 genomes]
rs73276240	1.00[AMR][1000 genomes]
rs73276257	1.00[AMR][1000 genomes]
rs73276275	1.00[AMR][1000 genomes]
rs73276299	1.00[AMR][1000 genomes]
rs73276302	1.00[AMR][1000 genomes]
rs73278304	1.00[AMR][1000 genomes]
rs73278305	1.00[AMR][1000 genomes]
rs73278320	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278324	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278334	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278386	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284058	1.00[AMR][1000 genomes]
rs840767	1.00[AMR][1000 genomes]
rs840773	1.00[AMR][1000 genomes]
rs859016	1.00[AMR][1000 genomes]
rs863482	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44840600-44848200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:44842600-44844000	Enhancers	HepG2	liver
3	chr12:44843200-44844000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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