Variant report

Variant	rs1948221
Chromosome Location	chr4:118548943-118548944
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17865885	0.92[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs1948228	0.93[ASN][1000 genomes]
rs1948230	0.93[ASN][1000 genomes]
rs1948251	0.93[ASN][1000 genomes]
rs2087438	0.84[ASN][1000 genomes]
rs2087440	0.93[ASN][1000 genomes]
rs2200828	0.94[ASN][1000 genomes]
rs2247756	0.94[ASN][1000 genomes]
rs2389385	0.84[ASN][1000 genomes]
rs2635196	0.93[ASN][1000 genomes]
rs2635197	0.93[ASN][1000 genomes]
rs2635207	0.94[ASN][1000 genomes]
rs2635301	0.94[ASN][1000 genomes]
rs2635303	0.94[ASN][1000 genomes]
rs2635315	0.90[ASN][1000 genomes]
rs2635317	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879833	chr4:118510812-118556306	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879834	chr4:118532627-118663111	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879835	chr4:118545387-118622573	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118543200-118557400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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