Variant report

Variant	rs2389385
Chromosome Location	chr4:118600402-118600403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17636061	1.00[CEU][hapmap]
rs17865885	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs17869274	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1948221	0.84[ASN][1000 genomes]
rs1948228	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1948230	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1948251	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2087438	0.82[ASN][1000 genomes]
rs2087440	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2200828	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2247756	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2635196	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2635197	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2635207	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2635301	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2635303	0.90[ASN][1000 genomes]
rs2635315	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2635317	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36190107	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879834	chr4:118532627-118663111	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879835	chr4:118545387-118622573	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3370507	chr4:118589326-118603104	Enhancers	n/a	n/a	inside rSNPs	diseases
4	esv3399086	chr4:118598398-118625286	Enhancers	lncRNA	n/a	inside rSNPs	diseases
5	esv3336477	chr4:118598398-118639356	Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv879837	chr4:118599194-118650042	Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118600200-118600600	Enhancers	H9 Cell Line	embryonic stem cell
2	chr4:118600200-118600600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr4:118600200-118600600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:118600200-118600600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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