Variant report

Variant	rs194828
Chromosome Location	chr7:103753765-103753766
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10276148	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12705180	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13230700	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs194833	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs194834	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs194847	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs194849	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs194858	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs194859	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs194865	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs194868	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2299409	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3808009	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3808010	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6465964	0.88[ASN][1000 genomes]
rs7780591	0.80[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103752000-103765000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:103752200-103765400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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