Variant report

Variant	rs194834
Chromosome Location	chr7:103762313-103762314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103740963..103742841-chr7:103761884..103763543,2	K562	blood:
2	chr7:103756645..103759833-chr7:103761465..103765297,3	K562	blood:
3	chr7:103761712..103763276-chr7:103769878..103771926,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10276148	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1035169	0.89[MEX][hapmap];0.83[TSI][hapmap]
rs10953408	0.83[MEX][hapmap]
rs12705180	0.84[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12705181	0.80[EUR][1000 genomes]
rs13230700	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs193888	0.83[MEX][hapmap];0.81[TSI][hapmap]
rs194828	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs194833	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs194846	0.83[MEX][hapmap]
rs194847	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs194849	0.85[CEU][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs194857	0.83[MEX][hapmap]
rs194858	0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs194859	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs194865	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs194868	0.85[CEU][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2245659	0.88[MEX][hapmap]
rs2299409	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2385140	0.83[MEX][hapmap]
rs3808009	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3808010	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6465964	0.87[ASN][1000 genomes]
rs9768749	0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs194834	STAG3	cis	parietal	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103752000-103765000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:103752200-103765400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:103759000-103765000	Weak transcription	K562	blood
4	chr7:103759200-103767000	Weak transcription	Psoas Muscle	Psoas
5	chr7:103760200-103764000	Weak transcription	Primary T cells from cord blood	blood
6	chr7:103761400-103765000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:103761400-103771000	Weak transcription	Fetal Lung	lung
8	chr7:103761400-103778600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:103761600-103765000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr7:103761600-103765600	Weak transcription	Pancreas	Pancrea
11	chr7:103761600-103765600	Weak transcription	Thymus	Thymus
12	chr7:103761600-103769600	Weak transcription	HSMM	muscle
13	chr7:103761800-103765000	Weak transcription	Primary B cells from cord blood	blood
14	chr7:103761800-103765600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr7:103761800-103766800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr7:103762000-103765000	Weak transcription	Right Ventricle	heart
17	chr7:103762000-103765200	Weak transcription	Left Ventricle	heart
18	chr7:103762000-103766800	Weak transcription	Brain Hippocampus Middle	brain
19	chr7:103762200-103765000	Weak transcription	Lung	lung
20	chr7:103762200-103765000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr7:103762200-103765600	Weak transcription	Aorta	Aorta

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