Variant report

Variant	rs1949426
Chromosome Location	chr1:169376867-169376868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1011638	1.00[JPT][hapmap]
rs10489190	1.00[ASN][1000 genomes]
rs10489417	1.00[JPT][hapmap]
rs10494477	1.00[JPT][hapmap]
rs10494478	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10800429	1.00[JPT][hapmap]
rs10800431	1.00[JPT][hapmap]
rs10800432	1.00[JPT][hapmap]
rs10919127	1.00[JPT][hapmap]
rs10919144	1.00[JPT][hapmap]
rs10919147	1.00[JPT][hapmap]
rs10919149	1.00[ASN][1000 genomes]
rs10919150	1.00[ASN][1000 genomes]
rs10919153	1.00[ASN][1000 genomes]
rs10919158	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10919162	1.00[ASN][1000 genomes]
rs10919165	1.00[ASN][1000 genomes]
rs10919172	0.93[ASN][1000 genomes]
rs12022617	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12022768	0.93[ASN][1000 genomes]
rs12025397	0.93[ASN][1000 genomes]
rs12025721	1.00[ASN][1000 genomes]
rs12028208	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12029800	1.00[JPT][hapmap]
rs12037926	1.00[ASN][1000 genomes]
rs12042082	1.00[JPT][hapmap]
rs12042990	1.00[JPT][hapmap]
rs12044982	1.00[ASN][1000 genomes]
rs12401962	1.00[ASN][1000 genomes]
rs12402774	0.93[ASN][1000 genomes]
rs12405725	0.85[JPT][hapmap]
rs12567342	1.00[JPT][hapmap]
rs1517742	0.93[ASN][1000 genomes]
rs1517746	0.93[ASN][1000 genomes]
rs17345426	0.85[JPT][hapmap]
rs17345531	1.00[ASN][1000 genomes]
rs17349677	1.00[ASN][1000 genomes]
rs17518147	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17576927	0.93[ASN][1000 genomes]
rs2092083	0.93[ASN][1000 genomes]
rs3766100	1.00[ASN][1000 genomes]
rs3766101	1.00[ASN][1000 genomes]
rs72704035	0.93[ASN][1000 genomes]
rs72706084	0.86[ASN][1000 genomes]
rs7413522	1.00[JPT][hapmap]
rs7414819	0.86[ASN][1000 genomes]
rs7522565	1.00[JPT][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7528142	1.00[JPT][hapmap]
rs7546361	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7554853	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556463	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv872531	chr1:169191860-169388193	Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv831871	chr1:169320673-169486680	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1949426	NME7	Cis_1M	lymphoblastoid	RTeQTL
rs1949426	NME7	cis	Thyroid	GTEx
rs1949426	NME7	cis	Artery Tibial	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169360800-169395200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:169376600-169377200	Weak transcription	Brain Anterior Caudate	brain

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