Variant report

Variant	rs7546361
Chromosome Location	chr1:169417525-169417526
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169417406..169419368-chr1:169421351..169424110,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1011638	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10489190	0.93[ASN][1000 genomes]
rs10494477	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10494478	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10800429	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10800431	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10800432	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10919127	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10919144	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10919147	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10919149	0.93[ASN][1000 genomes]
rs10919150	0.93[ASN][1000 genomes]
rs10919153	0.93[ASN][1000 genomes]
rs10919158	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10919162	0.93[ASN][1000 genomes]
rs10919165	0.93[ASN][1000 genomes]
rs10919172	1.00[ASN][1000 genomes]
rs12022617	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12022768	1.00[ASN][1000 genomes]
rs12025397	1.00[ASN][1000 genomes]
rs12025721	0.93[ASN][1000 genomes]
rs12028208	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12029800	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12037926	0.93[ASN][1000 genomes]
rs12042082	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12042990	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12044982	0.93[ASN][1000 genomes]
rs12128350	0.82[YRI][hapmap]
rs12401962	0.93[ASN][1000 genomes]
rs12402774	1.00[ASN][1000 genomes]
rs12405725	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs12567342	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1517742	1.00[ASN][1000 genomes]
rs1517746	1.00[ASN][1000 genomes]
rs17345426	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17345531	0.93[ASN][1000 genomes]
rs17349677	0.93[ASN][1000 genomes]
rs17518147	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17576927	1.00[ASN][1000 genomes]
rs1949426	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2092083	1.00[ASN][1000 genomes]
rs3766100	0.93[ASN][1000 genomes]
rs3766101	0.93[ASN][1000 genomes]
rs72704035	1.00[ASN][1000 genomes]
rs72706084	0.93[ASN][1000 genomes]
rs7413522	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7414819	0.93[ASN][1000 genomes]
rs7522565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7528142	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7554853	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7556463	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv831871	chr1:169320673-169486680	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1001454	chr1:169387381-169465274	Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv1005941	chr1:169410486-169456393	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7546361	NME7	cis	Artery Tibial	GTEx
rs7546361	NME7	cis	Thyroid	GTEx
rs7546361	NME7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169413400-169418200	Weak transcription	Stomach Mucosa	stomach

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