Variant report
| Variant | rs1949583 |
|---|---|
| Chromosome Location | chr3:43149575-43149576 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000144647 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1072822 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12233614 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12485530 | 0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12485578 | 0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12487785 | 0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12497427 | 0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12497602 | 0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1523125 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1523126 | 0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1566422 | 0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs17391761 | 0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs17470089 | 0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1815070 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1949584 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs488069 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs55764298 | 0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs55819365 | 0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs55945909 | 0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs55954171 | 0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs604033 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6796161 | 0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv460522 | chr3:42967597-43175207 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv590149 | chr3:42967597-43175207 | Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv834672 | chr3:43132722-43306272 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
