Variant report

Variant	rs1949787
Chromosome Location	chr7:97723665-97723666
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10499942	1.00[AFR][1000 genomes]
rs10499943	1.00[AFR][1000 genomes]
rs12530615	1.00[AFR][1000 genomes]
rs12531599	1.00[AFR][1000 genomes]
rs12536913	0.82[EUR][1000 genomes]
rs12539192	1.00[AFR][1000 genomes]
rs12670423	1.00[AFR][1000 genomes]
rs12673143	1.00[AFR][1000 genomes]
rs1404131	1.00[AFR][1000 genomes]
rs1524266	0.89[AFR][1000 genomes]
rs1532379	1.00[AFR][1000 genomes]
rs1636515	0.84[ASN][1000 genomes]
rs17169293	1.00[AFR][1000 genomes]
rs17169369	0.89[AFR][1000 genomes]
rs17169408	1.00[AFR][1000 genomes]
rs17169414	1.00[AFR][1000 genomes]
rs17169418	1.00[AFR][1000 genomes]
rs17169422	0.89[AFR][1000 genomes]
rs1949788	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1971303	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35170600	1.00[AFR][1000 genomes]
rs56204700	1.00[AFR][1000 genomes]
rs56932675	1.00[AFR][1000 genomes]
rs57310057	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57699757	1.00[AFR][1000 genomes]
rs58551784	1.00[AFR][1000 genomes]
rs58959822	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59042573	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59564035	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60183675	1.00[AFR][1000 genomes]
rs60191981	1.00[AFR][1000 genomes]
rs60264472	1.00[AFR][1000 genomes]
rs61198600	1.00[AFR][1000 genomes]
rs61312480	1.00[AFR][1000 genomes]
rs62479774	0.89[ASN][1000 genomes]
rs72494440	1.00[AFR][1000 genomes]
rs7783842	0.82[EUR][1000 genomes]
rs7807175	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7807300	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7807472	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9640654	1.00[AFR][1000 genomes]
rs9641221	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9641224	0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9641225	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9641226	0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9641228	1.00[AFR][1000 genomes]
rs9641230	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3500384	chr7:97527787-98015382	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	esv3500386	chr7:97527787-98015382	Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1017481	chr7:97597641-98041043	Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv539031	chr7:97597641-98041043	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv1019531	chr7:97653880-98034129	Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv539032	chr7:97653880-98034129	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	esv1816676	chr7:97676259-97868033	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97723400-97726600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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