Variant report
Variant | rs58959822 |
---|---|
Chromosome Location | chr7:97732724-97732725 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:61)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:97732724-97732774 | Hela-S3 | cervix: | n/a |
2 | chr7:97732724-97732774 | SAEC | small airway: | n/a |
3 | chr7:97732724-97732774 | AG09309 | skin: | n/a |
4 | chr7:97732724-97732774 | HRCEpiC | kidney: | n/a |
5 | chr7:97732724-97732774 | NHBE | bronchial: | n/a |
6 | chr7:97732724-97732774 | HUVEC | blood vessel: | n/a |
7 | chr7:97732724-97732774 | HL-60 | blood: | n/a |
8 | chr7:97732724-97732774 | SK-N-SH_RA | brain: | n/a |
9 | chr7:97732724-97732774 | HCPEpiC | choroid plexus: | n/a |
10 | chr7:97732724-97732774 | HCM | heart: | n/a |
11 | chr7:97732724-97732774 | HRE | kidney: | n/a |
12 | chr7:97732724-97732774 | ECC-1 | luminal epithelium: | n/a |
13 | chr7:97732724-97732774 | RPTEC | kidney: | n/a |
14 | chr7:97732724-97732774 | AG04449 | skin: | fetal |
15 | chr7:97732724-97732774 | PFSK-1 | brain: | n/a |
16 | chr7:97732724-97732774 | IMR90 | lung: | fetal |
17 | chr7:97732724-97732774 | K562 | blood: | n/a |
18 | chr7:97732724-97732774 | Caco-2 | colon: | n/a |
19 | chr7:97732724-97732774 | HNPCEpiC | eye: | n/a |
20 | chr7:97732724-97732774 | HPAEpiC | pulmonary alveolar: | n/a |
21 | chr7:97732724-97732774 | CMK | blood: | n/a |
22 | chr7:97732724-97732774 | MCF10A-Er-Src | breast: | n/a |
23 | chr7:97732724-97732774 | HAEpiC | amniotic membrane: | n/a |
24 | chr7:97732724-97732774 | H1-hESC | embryonic stem cell: | embryo |
25 | chr7:97732724-97732774 | HepG2 | liver: | n/a |
26 | chr7:97732724-97732774 | HCT-116 | colon: | n/a |
27 | chr7:97732724-97732774 | AoSMC | blood vessel: | n/a |
28 | chr7:97732724-97732774 | PrEC | prostate: | n/a |
29 | chr7:97732724-97732774 | HIPEpiC | eye: | n/a |
30 | chr7:97732724-97732774 | A549 | lung: | n/a |
31 | chr7:97732724-97732774 | AG10803 | skin: | n/a |
32 | chr7:97732724-97732774 | NT2-D1 | testis: | n/a |
33 | chr7:97732724-97732774 | SK-N-MC | brain: | n/a |
34 | chr7:97732724-97732774 | ProgFib | skin: | n/a |
35 | chr7:97732724-97732774 | PANC-1 | pancreas: | n/a |
36 | chr7:97732724-97732774 | LNCaP | prostate: | n/a |
37 | chr7:97732724-97732774 | NHDF-neo | bronchial: | n/a |
38 | chr7:97732724-97732774 | GM19239 | blood: | n/a |
39 | chr7:97732724-97732774 | HEEpiC | esophagus: | n/a |
40 | chr7:97732724-97732774 | AG04450 | lung: | fetal |
41 | chr7:97732724-97732774 | HCF | heart: | n/a |
42 | chr7:97732724-97732774 | AG09319 | gingival: | n/a |
43 | chr7:97732724-97732774 | SK-N-SH | brain: | n/a |
44 | chr7:97732724-97732774 | T-47D | breast: | n/a |
45 | chr7:97732724-97732774 | GM12878 | blood: | n/a |
46 | chr7:97732724-97732774 | BE2_C | brain: | n/a |
47 | chr7:97732724-97732774 | BJ | skin: | n/a |
48 | chr7:97732724-97732774 | HRPEpiC | eye: | n/a |
49 | chr7:97732724-97732774 | HEK293 | kidney: | embryo |
50 | chr7:97732724-97732774 | Hepatocyte | liver: | n/a |
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:97729939..97733810-chr7:97734311..97737093,5 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
LMTK2 | CpG island |
ENSG00000164715 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1636515 | 0.84[ASN][1000 genomes] |
rs1949787 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1949788 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1971303 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs57310057 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs59042573 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs59564035 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62479774 | 0.82[AFR][1000 genomes];0.89[ASN][1000 genomes] |
rs7807175 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7807300 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7807472 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9641221 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9641224 | 0.93[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs9641225 | 0.93[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs9641226 | 0.91[AMR][1000 genomes];0.99[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1031371 | chr7:97312452-98070538 | Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 42 gene(s) | inside rSNPs | diseases |
2 | esv3500384 | chr7:97527787-98015382 | Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 36 gene(s) | inside rSNPs | diseases |
3 | esv3500386 | chr7:97527787-98015382 | Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 36 gene(s) | inside rSNPs | diseases |
4 | nsv1017481 | chr7:97597641-98041043 | Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 32 gene(s) | inside rSNPs | diseases |
5 | nsv539031 | chr7:97597641-98041043 | Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 32 gene(s) | inside rSNPs | diseases |
6 | nsv1019531 | chr7:97653880-98034129 | Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
7 | nsv539032 | chr7:97653880-98034129 | Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
8 | esv1816676 | chr7:97676259-97868033 | Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
9 | nsv831066 | chr7:97726879-97890550 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
No data |