Variant report

Variant	rs1950092
Chromosome Location	chr11:15809401-15809402
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11023727	0.80[EUR][1000 genomes]
rs12798618	0.82[EUR][1000 genomes]
rs1440717	0.80[EUR][1000 genomes]
rs1950093	0.84[EUR][1000 genomes]
rs326685	0.82[EUR][1000 genomes]
rs326686	0.82[EUR][1000 genomes]
rs326687	0.82[EUR][1000 genomes]
rs326688	0.82[EUR][1000 genomes]
rs326689	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs326690	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs923031	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051187	chr11:15781277-15846536	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760185	chr11:15808636-15816484	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15806000-15810200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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