Variant report

Variant	rs326690
Chromosome Location	chr11:15822429-15822430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10832516	0.81[CEU][hapmap]
rs1950092	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs326689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129677	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051187	chr11:15781277-15846536	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1037145	chr11:15818508-15830938	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs326690	FAR1	cis	parietal	SCAN
rs326690	RICTOR	trans	cerebellum	SCAN
rs326690	DKK3	cis	cerebellum	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15813800-15828800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:15821000-15823200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr11:15821200-15822600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr11:15821400-15822600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:15821400-15822600	Enhancers	HMEC	breast
6	chr11:15821400-15822600	Enhancers	NHEK	skin
7	chr11:15821400-15823800	Enhancers	Placenta Amnion	Placenta Amnion
8	chr11:15821400-15824000	Enhancers	NH-A	brain
9	chr11:15821600-15822600	Enhancers	Duodenum Mucosa	Duodenum
10	chr11:15821600-15822600	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr11:15821600-15822600	Enhancers	HSMM	muscle
12	chr11:15821600-15829200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:15821800-15822600	Enhancers	Primary hematopoietic stem cells	blood
14	chr11:15821800-15822600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:15821800-15822600	Flanking Active TSS	Osteobl	bone
16	chr11:15821800-15823200	Enhancers	HSMMtube	muscle
17	chr11:15822000-15827800	Weak transcription	Aorta	Aorta
18	chr11:15822200-15822600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr11:15822200-15822600	Enhancers	NHLF	lung
20	chr11:15822200-15822800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:15822200-15823200	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr11:15822200-15823400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:15822400-15822600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:15822400-15822600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:15822400-15822600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
26	chr11:15822400-15822800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:15822400-15823400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:15822400-15824000	Enhancers	Muscle Satellite Cultured Cells	--

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