Variant report

Variant	rs1951850
Chromosome Location	chr9:9858194-9858195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10117487	0.81[CEU][hapmap];0.83[JPT][hapmap]
rs1408116	0.86[EUR][1000 genomes]
rs1570594	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16874	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2209192	0.83[CEU][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4740993	0.88[JPT][hapmap]
rs7868673	0.83[JPT][hapmap]
rs973917	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892270	chr9:9591059-9860735	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2422381	chr9:9647540-9887820	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2829906	chr9:9737201-9897866	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1034731	chr9:9776126-10481262	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2753179	chr9:9778653-9861006	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1019399	chr9:9780915-9942126	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv471276	chr9:9785685-9863227	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv892277	chr9:9785685-9882950	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1018814	chr9:9793285-9957301	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv892287	chr9:9794545-9869714	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv892288	chr9:9794545-9882950	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv613332	chr9:9798092-9869714	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv613338	chr9:9801907-9859571	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
14	nsv892292	chr9:9802458-9869714	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
15	nsv466144	chr9:9803954-9860735	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
16	nsv613344	chr9:9803954-9860735	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
17	nsv613351	chr9:9816955-9859571	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
18	nsv1019920	chr9:9817031-9925880	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv539984	chr9:9817031-9925880	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv1025723	chr9:9817231-9950917	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv539985	chr9:9817231-9950917	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv613352	chr9:9829018-9859571	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
23	nsv613353	chr9:9829018-9860735	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
24	nsv613354	chr9:9829018-9882950	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
25	nsv892293	chr9:9832245-9893002	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
26	nsv892294	chr9:9832245-9898870	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
27	nsv892295	chr9:9832245-10380406	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	nsv1022172	chr9:9841432-9975529	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv1029136	chr9:9847852-9863465	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
30	nsv1015187	chr9:9847852-9944268	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv892296	chr9:9852100-9937753	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
32	nsv1022613	chr9:9857456-9985419	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv539986	chr9:9857456-9985419	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9855600-9861000	Weak transcription	Dnd41	blood
2	chr9:9856200-9860800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:9856200-9862400	Weak transcription	Fetal Thymus	thymus
4	chr9:9857400-9858400	Enhancers	Pancreatic Islets	Pancreatic Islet

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