Variant report

Variant	rs1952361
Chromosome Location	chr13:93985503-93985504
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:93979914..93981484-chr13:93985031..93987151,2	K562	blood:
2	chr13:93982327..93985980-chr9:134148007..134150497,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1323975	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1323985	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1408209	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1819341	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2225189	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35664727	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4142601	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6492659	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7324202	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7984266	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7988684	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7992679	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9301874	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9301875	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9524017	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9524021	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9561321	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9561325	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9561332	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs995811	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2751156	chr13:93912999-93988638	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv900919	chr13:93957816-94030693	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93981400-93987400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links