Variant report

Variant	rs35664727
Chromosome Location	chr13:93976772-93976773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:93975150..93977138-chr13:93989003..93991236,2	K562	blood:
2	chr13:93970087..93972348-chr13:93976027..93978960,2	K562	blood:
3	chr13:93963378..93968505-chr13:93974566..93977658,4	K562	blood:
4	chr13:93878631..93880331-chr13:93976450..93979283,3	MCF-7	breast:
5	chr13:93976016..93978454-chr13:94013289..94015025,2	K562	blood:
6	chr13:93975713..93977333-chr9:134000453..134002028,2	K562	blood:
7	chr13:93974210..93976975-chr13:93986030..93988767,2	K562	blood:
8	chr13:93961269..93969594-chr13:93973410..93977735,11	K562	blood:
9	chr13:93975407..93977294-chr13:93983328..93985446,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000126883	Chromatin interaction
ENSG00000183098	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1323975	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1323985	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1408209	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1819341	0.89[AMR][1000 genomes]
rs1952361	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2225189	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4142601	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6492659	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7324202	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7984266	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7988684	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7992679	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9301874	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9301875	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9524017	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9524021	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9561321	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9561325	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9561332	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs995811	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2751156	chr13:93912999-93988638	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv900919	chr13:93957816-94030693	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1050202	chr13:93961478-93982388	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93971400-93982400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:93971600-93979600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr13:93974000-93977800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr13:93974000-93978200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr13:93974200-93977200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr13:93974200-93978000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr13:93974200-93978000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr13:93974200-93978200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr13:93974200-93978200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr13:93974200-93978600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr13:93974200-93982400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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