Variant report
| Variant | rs1953359 |
|---|---|
| Chromosome Location | chr14:56293187-56293188 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:56264106..56265769-chr14:56291458..56293554,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs11629352 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12878170 | 0.92[ASN][1000 genomes] |
| rs12886883 | 0.86[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs12888134 | 0.86[ASN][1000 genomes] |
| rs12891989 | 0.90[ASN][1000 genomes] |
| rs12892029 | 0.86[ASN][1000 genomes] |
| rs12892971 | 0.81[ASN][1000 genomes] |
| rs17128832 | 0.81[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs17128836 | 0.89[ASN][1000 genomes] |
| rs17128847 | 0.92[ASN][1000 genomes] |
| rs1953361 | 0.91[ASN][1000 genomes] |
| rs34181761 | 0.92[ASN][1000 genomes] |
| rs34403994 | 0.82[ASN][1000 genomes] |
| rs34831029 | 0.89[ASN][1000 genomes] |
| rs35177157 | 0.89[ASN][1000 genomes] |
| rs35201150 | 0.86[ASN][1000 genomes] |
| rs35657227 | 0.87[ASN][1000 genomes] |
| rs35969016 | 0.85[ASN][1000 genomes] |
| rs57997565 | 0.89[ASN][1000 genomes] |
| rs61977794 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6573064 | 0.81[AMR][1000 genomes] |
| rs71412699 | 0.85[ASN][1000 genomes] |
| rs7144347 | 0.92[ASN][1000 genomes] |
| rs7154675 | 0.91[ASN][1000 genomes] |
| rs7156609 | 0.81[AMR][1000 genomes] |
| rs7161015 | 0.92[ASN][1000 genomes] |
| rs8022496 | 0.81[AMR][1000 genomes] |
| rs880193 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs945275 | 0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv901966 | chr14:56160904-56436203 | Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv901977 | chr14:56213392-56492996 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:56290800-56293200 | Weak transcription | Stomach Mucosa | stomach |
| 2 | chr14:56290800-56295400 | Weak transcription | Pancreas | Pancrea |
