Variant report

Variant	rs6573064
Chromosome Location	chr14:56290958-56290959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10130664	0.80[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11623836	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1953359	0.81[AMR][1000 genomes]
rs1953360	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1953362	0.91[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1953363	0.91[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1959096	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1959097	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1959098	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2184562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2342593	0.91[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2880397	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4901603	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6573062	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7142470	0.80[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7148208	0.88[EUR][1000 genomes]
rs7155326	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7156609	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157979	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004650	0.80[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8008648	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8019451	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8022496	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs868498	0.89[EUR][1000 genomes]
rs945275	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9944128	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56289600-56291200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr14:56289800-56292000	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr14:56290000-56291000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr14:56290400-56291000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr14:56290400-56291000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr14:56290400-56291200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr14:56290800-56293200	Weak transcription	Stomach Mucosa	stomach
8	chr14:56290800-56295400	Weak transcription	Pancreas	Pancrea

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