Variant report

Variant	rs7148208
Chromosome Location	chr14:56298925-56298926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10130664	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10139439	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623836	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627644	0.83[ASN][1000 genomes]
rs12590558	0.83[ASN][1000 genomes]
rs12897306	0.83[ASN][1000 genomes]
rs1953360	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1953362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1953363	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1959092	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1959096	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1959097	0.90[EUR][1000 genomes]
rs1959098	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2152289	0.83[ASN][1000 genomes]
rs2184562	0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs2210781	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs2342593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2342840	0.86[ASN][1000 genomes]
rs2880397	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4901603	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4901614	0.83[ASN][1000 genomes]
rs6573062	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6573064	0.88[EUR][1000 genomes]
rs7142470	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7143461	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149155	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155326	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156609	0.90[EUR][1000 genomes]
rs7156779	0.83[ASN][1000 genomes]
rs7157979	0.90[EUR][1000 genomes]
rs8004650	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8008648	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019451	0.89[EUR][1000 genomes]
rs8022496	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs868498	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs945275	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9943970	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9944128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7148208	ZMYND10	trans	brain	seeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56294000-56301800	Enhancers	Stomach Mucosa	stomach
2	chr14:56297600-56299200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr14:56298000-56299400	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr14:56298000-56299600	Enhancers	Hela-S3	cervix
5	chr14:56298200-56299600	Enhancers	HepG2	liver
6	chr14:56298200-56300200	Enhancers	Fetal Intestine Small	intestine
7	chr14:56298400-56299400	Enhancers	Fetal Kidney	kidney
8	chr14:56298400-56299600	Enhancers	Fetal Intestine Large	intestine
9	chr14:56298600-56299200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:56298600-56299400	Enhancers	NHLF	lung
11	chr14:56298800-56299000	Active TSS	A549	lung
12	chr14:56298800-56299200	Enhancers	NH-A	brain

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