Variant report

Variant	rs2210781
Chromosome Location	chr14:56269633-56269634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:56263621..56267640-chr14:56269558..56273646,4	K562	blood:
2	chr14:56269404..56272163-chr14:56272459..56274714,3	MCF-7	breast:
3	chr14:56259091..56261693-chr14:56268032..56271082,3	K562	blood:
4	chr14:56259914..56261848-chr14:56268841..56271820,2	K562	blood:

Variant related genes	Relation type
ENSG00000258791	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10130664	1.00[CEU][hapmap]
rs10135742	1.00[AFR][1000 genomes]
rs11627644	0.82[EUR][1000 genomes]
rs12590558	0.81[EUR][1000 genomes]
rs12897306	0.81[EUR][1000 genomes]
rs1953362	0.80[CEU][hapmap]
rs1953363	0.80[CEU][hapmap]
rs2095492	1.00[AFR][1000 genomes]
rs2184562	0.80[CEU][hapmap]
rs2342593	0.80[CEU][hapmap]
rs4901614	0.81[EUR][1000 genomes]
rs7142470	1.00[CEU][hapmap]
rs7148208	0.82[EUR][1000 genomes]
rs7156779	0.81[EUR][1000 genomes]
rs8004650	1.00[CEU][hapmap]
rs868498	0.81[EUR][1000 genomes]
rs9944128	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832804	chr14:56083850-56277632	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56257600-56271600	Weak transcription	Gastric	stomach
2	chr14:56262200-56269800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:56267000-56269800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:56267000-56270200	Enhancers	Hela-S3	cervix
5	chr14:56267200-56270600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:56267200-56271000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:56268000-56269800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:56268600-56271800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:56268800-56270800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr14:56269000-56270000	Enhancers	Stomach Mucosa	stomach
11	chr14:56269200-56270400	Flanking Active TSS	A549	lung
12	chr14:56269200-56272600	Enhancers	Small Intestine	intestine
13	chr14:56269200-56275200	Enhancers	Fetal Intestine Small	intestine
14	chr14:56269400-56270800	Enhancers	HMEC	breast
15	chr14:56269400-56271000	Enhancers	NHEK	skin
16	chr14:56269600-56270400	Enhancers	K562	blood
17	chr14:56269600-56270800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:56269600-56270800	Enhancers	Duodenum Mucosa	Duodenum
19	chr14:56269600-56270800	Enhancers	Fetal Intestine Large	intestine
20	chr14:56269600-56270800	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr14:56269600-56270800	Enhancers	HepG2	liver
22	chr14:56269600-56271200	Enhancers	HUVEC	blood vessel
23	chr14:56269600-56275200	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links