Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10139439	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10144952	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11623836	0.83[ASN][1000 genomes]
rs11627644	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12897306	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1953360	0.83[ASN][1000 genomes]
rs1953363	0.83[ASN][1000 genomes]
rs1959092	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1959096	0.83[ASN][1000 genomes]
rs1959098	0.83[ASN][1000 genomes]
rs2152289	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2210781	0.81[EUR][1000 genomes]
rs2880397	0.83[ASN][1000 genomes]
rs4901614	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573065	0.95[EUR][1000 genomes]
rs7143461	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7148208	0.83[ASN][1000 genomes]
rs7149155	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7155326	0.83[ASN][1000 genomes]
rs7156779	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008648	0.83[ASN][1000 genomes]
rs8022496	0.83[ASN][1000 genomes]
rs945275	0.83[ASN][1000 genomes]
rs9943970	0.88[EUR][1000 genomes]
rs9944128	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56332600-56339200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:56334400-56336000	Weak transcription	Osteobl	bone
3	chr14:56334800-56336000	Weak transcription	HUVEC	blood vessel
4	chr14:56334800-56336200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr14:56335000-56336000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr14:56335000-56336000	Weak transcription	NHEK	skin
7	chr14:56335200-56335400	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr14:56335200-56336000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr14:56335200-56336200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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