Variant report

Variant	rs1959098
Chromosome Location	chr14:56284447-56284448
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10130664	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10139439	1.00[ASN][1000 genomes]
rs11623836	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627644	0.83[ASN][1000 genomes]
rs12590558	0.83[ASN][1000 genomes]
rs12897306	0.83[ASN][1000 genomes]
rs1953360	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1953362	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1953363	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1959092	1.00[ASN][1000 genomes]
rs1959096	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1959097	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2152289	0.83[ASN][1000 genomes]
rs2184562	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2342593	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2342840	0.86[ASN][1000 genomes]
rs2880397	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4901603	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4901614	0.83[ASN][1000 genomes]
rs6573062	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6573064	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7142470	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7143461	1.00[ASN][1000 genomes]
rs7148208	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149155	1.00[ASN][1000 genomes]
rs7155326	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156609	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7156779	0.83[ASN][1000 genomes]
rs7157979	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8004650	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8008648	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019451	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8022496	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs868498	0.89[EUR][1000 genomes]
rs945275	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9944128	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56281600-56285400	Weak transcription	Stomach Mucosa	stomach
2	chr14:56283200-56284600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr14:56283200-56284600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr14:56283200-56285400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:56283200-56285600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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