Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56302735..56305640-chr14:56310752..56313567,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10130664	1.00[JPT][hapmap]
rs10139439	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10144952	0.92[EUR][1000 genomes]
rs11623836	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11627644	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12590558	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12897306	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1953360	0.83[ASN][1000 genomes]
rs1953362	1.00[JPT][hapmap]
rs1953363	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1959092	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1959096	0.83[ASN][1000 genomes]
rs1959098	0.83[ASN][1000 genomes]
rs2152289	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2184562	1.00[JPT][hapmap]
rs2210781	0.81[EUR][1000 genomes]
rs2342593	1.00[JPT][hapmap]
rs2880397	0.83[ASN][1000 genomes]
rs6573065	0.95[EUR][1000 genomes]
rs7142470	1.00[JPT][hapmap]
rs7143461	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7148208	0.83[ASN][1000 genomes]
rs7149155	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7155326	0.83[ASN][1000 genomes]
rs7156779	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004650	1.00[JPT][hapmap]
rs8008648	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs8022496	0.83[ASN][1000 genomes]
rs945275	0.83[ASN][1000 genomes]
rs9943970	0.88[EUR][1000 genomes]
rs9944128	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56306200-56314800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:56311000-56313200	Weak transcription	Hela-S3	cervix
3	chr14:56311000-56314800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr14:56311000-56316800	Weak transcription	Stomach Mucosa	stomach
5	chr14:56311200-56313200	Weak transcription	Colon Smooth Muscle	Colon
6	chr14:56311600-56313000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung

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