Variant report

Variant	rs1953800
Chromosome Location	chr14:70958696-70958697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11626228	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11626414	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11628785	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12880777	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12884918	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12893988	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17476399	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17567627	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2022624	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2877661	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34273029	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34866539	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3764183	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4899359	0.86[EUR][1000 genomes]
rs6573971	0.89[EUR][1000 genomes]
rs7493545	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8019852	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565042	chr14:70951234-71011734	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1050615	chr14:70954149-71013235	Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2763072	chr14:70954149-71013247	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70954800-70958800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
2	chr14:70955000-70959200	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr14:70955400-70959200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr14:70955600-70965600	Weak transcription	Right Ventricle	heart
5	chr14:70955800-70958800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:70955800-70959200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
7	chr14:70956000-70959200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
8	chr14:70956600-70966600	Weak transcription	Left Ventricle	heart
9	chr14:70956800-70958800	ZNF genes & repeats	Liver	Liver
10	chr14:70956800-70961800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr14:70957200-70958800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
12	chr14:70957600-70963200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr14:70957800-70958800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
14	chr14:70958000-70958800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:70958000-70958800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
16	chr14:70958000-70959200	ZNF genes & repeats	Brain Hippocampus Middle	brain
17	chr14:70958600-70963200	Weak transcription	Aorta	Aorta
18	chr14:70958600-70963200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr14:70958600-70963200	Weak transcription	Lung	lung
20	chr14:70958600-70963200	Weak transcription	Ovary	ovary
21	chr14:70958600-70963800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr14:70958600-70964000	Weak transcription	Gastric	stomach
23	chr14:70958600-70966600	Weak transcription	Brain Anterior Caudate	brain
24	chr14:70958600-70967200	Weak transcription	Brain Angular Gyrus	brain
25	chr14:70958600-70989000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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