Variant report

Variant	rs1954407
Chromosome Location	chr6:28695149-28695150
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
RPSAP2	TF binding region
ENSG00000232040	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000213916	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000204709	Chromatin interaction
ENSG00000221191	Chromatin interaction
ENSG00000233224	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1419094	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894184	0.82[AMR][1000 genomes]
rs16894189	0.82[AMR][1000 genomes]
rs16894234	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2211495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60583357	0.86[AMR][1000 genomes]
rs9257171	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28693600-28696200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:28693800-28696200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:28694200-28697800	Active TSS	K562	blood
4	chr6:28694400-28695400	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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