Variant report

Variant	rs9257171
Chromosome Location	chr6:28744021-28744022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1419094	0.90[AMR][1000 genomes]
rs16894234	0.90[AMR][1000 genomes]
rs16894237	0.93[AMR][1000 genomes]
rs1954407	0.93[AMR][1000 genomes]
rs2211495	0.93[AMR][1000 genomes]
rs57558053	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28740000-28746000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:28740400-28745200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:28740800-28744400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:28741000-28745000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr6:28741600-28744400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr6:28742600-28745200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr6:28742800-28744400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr6:28743000-28744200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:28743200-28744200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
10	chr6:28743600-28744200	Bivalent Enhancer	HepG2	liver
11	chr6:28743600-28745000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr6:28743600-28745000	Active TSS	H9 Cell Line	embryonic stem cell
13	chr6:28743600-28745000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
14	chr6:28743600-28745200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:28743600-28746000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:28743800-28744600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:28744000-28744200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
18	chr6:28744000-28745400	Flanking Active TSS	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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