Variant report

Variant	rs1954757
Chromosome Location	chr11:85276412-85276413
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10501595	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs10751126	0.83[EUR][1000 genomes]
rs11604028	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11607685	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12417341	0.86[EUR][1000 genomes]
rs12420907	0.89[ASN][1000 genomes]
rs1425223	0.81[ASN][1000 genomes]
rs1504027	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1504029	0.81[ASN][1000 genomes]
rs158217	1.00[EUR][1000 genomes]
rs1647941	0.83[EUR][1000 genomes]
rs17148254	0.81[EUR][1000 genomes]
rs17208492	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17208519	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs17810659	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1806414	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs184057	1.00[EUR][1000 genomes]
rs185932	1.00[EUR][1000 genomes]
rs1863256	0.82[ASN][1000 genomes]
rs1892872	0.84[EUR][1000 genomes]
rs207060	1.00[EUR][1000 genomes]
rs2162055	0.89[EUR][1000 genomes]
rs2512800	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs286494	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs286509	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs286512	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs286521	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs286522	1.00[EUR][1000 genomes]
rs286523	0.95[EUR][1000 genomes]
rs286524	1.00[EUR][1000 genomes]
rs286525	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs286529	0.81[EUR][1000 genomes]
rs286530	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs286531	1.00[EUR][1000 genomes]
rs286534	1.00[EUR][1000 genomes]
rs286537	1.00[EUR][1000 genomes]
rs286538	1.00[EUR][1000 genomes]
rs286539	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs286540	1.00[EUR][1000 genomes]
rs286541	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35097455	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4943925	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4944520	0.82[ASN][1000 genomes]
rs4944527	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4944529	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs55933855	0.82[ASN][1000 genomes]
rs56073783	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56238215	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56256400	0.82[ASN][1000 genomes]
rs57223077	1.00[EUR][1000 genomes]
rs60838923	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61286868	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62388	1.00[EUR][1000 genomes]
rs6592252	0.86[EUR][1000 genomes]
rs6592253	0.86[EUR][1000 genomes]
rs7108132	0.89[EUR][1000 genomes]
rs7108137	1.00[EUR][1000 genomes]
rs7115250	0.89[EUR][1000 genomes]
rs7939217	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943586	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs7948778	0.82[ASN][1000 genomes]
rs881121	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs947861	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs947862	0.84[EUR][1000 genomes]
rs947863	0.85[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv1050363	chr11:85163437-85293233	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv541111	chr11:85163437-85293233	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv898046	chr11:85180409-85300458	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv898047	chr11:85180409-85377707	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
10	nsv898048	chr11:85206156-85404138	Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv898049	chr11:85231475-85292310	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85248800-85292000	Weak transcription	Aorta	Aorta
2	chr11:85261400-85284000	Weak transcription	Left Ventricle	heart
3	chr11:85273200-85282400	Weak transcription	Ovary	ovary

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